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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17400698_17401868_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17400698 - 17401868
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
AACAATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATGTTGTAATA
Flanking Amino Acid:
TILAAARELYGPELFRQRVL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.6
46.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
69.9
0.45
1
62
43.1
Minor 5ss
42.8
-0.8
2.9
47.3
48.1
Minor BPS
48.7
-0.1
2
63.03
38.3

Associated Gene:

Gene:
RFC4
Ensembl Gene ID:
ENSAPLG00000007380
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007713
17395238 - 17406369
11132