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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17405888_17406244_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17405888 - 17406244
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
TCTCTGTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TGTTCCATAACG
Flanking Amino Acid:
KPRPVPWVEKYRPKNVDEVA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.4
39.6
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
79
0.65
0.9
76.9
36.3
Minor 5ss
30.4
-2.2
3.6
39
42
Minor BPS
72.4
0.57
1.7
77.67
38.8

Associated Gene:

Gene:
RFC4
Ensembl Gene ID:
ENSAPLG00000007380
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007713
17395238 - 17406369
11132