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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17457694_17465212_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17457694 - 17465212
Intron Length:
7519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TGGAGGCTGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATC
Flanking Amino Acid:
NVVTYLTSIPSIGFIIIIDR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
52.9
0.07
1.2
42.9
47.4
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
71.1
0.64
1.4
77.61
31.7

Associated Gene:

Gene:
MCF2L2
Ensembl Gene ID:
ENSAPLG00000007943
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008288
17455853 - 17547340
91488