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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17466663_17469894_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17466663 - 17469894
Intron Length:
3232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GCATTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCTCTCAGTC
Flanking Amino Acid:
YRDDFKMKVPIIMLNSVSDL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.4
37.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76
0.59
1
72.7
42.1
Minor 5ss
43.4
-0.7
2.9
58.5
45.8
Minor BPS
52
0.04
1.8
67.85
37.9

Associated Gene:

Gene:
MCF2L2
Ensembl Gene ID:
ENSAPLG00000007943
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008288
17455853 - 17547340
91488