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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17478632_17479435_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17478632 - 17479435
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
SLELHQQLDKASKWCEAGIY
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
81.3
0.7
1
82.7
32.1
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
MCF2L2
Ensembl Gene ID:
ENSAPLG00000007943
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008288
17455853 - 17547340
91488