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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17530814_17531650_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17530814 - 17531650
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTTTCAACT
Flanking Amino Acid:
YVEELQSIIEGYASEMDNPN
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.3
0.73
0.7
76.6
25.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
69.6
0.69
1.5
84.65
35.8

Associated Gene:

Gene:
MCF2L2
Ensembl Gene ID:
ENSAPLG00000007943
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008288
17455853 - 17547340
91488