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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17546097_17546762_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17546097 - 17546762
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTCAAACA
Flanking Amino Acid:
ASYSFKNSLKMSTVGITENV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.5
0.55
1
71
38.6
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
50.3
0.01
1.9
68.47
38

Associated Gene:

Gene:
MCF2L2
Ensembl Gene ID:
ENSAPLG00000007943
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008288
17455853 - 17547340
91488