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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17573354_17576893_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17573354 - 17576893
Intron Length:
3540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GACTACTCATTT
Flanking Amino Acid:
PQLILLAFACAFSSCCAEVA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.1
0.79
0.8
80.1
31.9
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
45.2
-0.2
1.9
59.35
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021030
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040907
17573308 - 17589150
15843
ENSAPLT00000039830
17573308 - 17585236
11929