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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17577643_17578916_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17577643 - 17578916
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTCTCCTTAAGC
Flanking Amino Acid:
LQLMVQNKQKKRMEYLTVNP
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
69.7
0.6
1.7
73.91
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021030
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039830
17573308 - 17585236
11929
ENSAPLT00000040907
17573308 - 17589150
15843