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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17593189_17594365_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17593189 - 17594365
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TCTGATTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTCTGTAACT
Flanking Amino Acid:
GRRCLWALQRQPWNPAQRLV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.2
0.54
1
68.1
42.1
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
70.4
0.72
2
90.07
34.1

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641