About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17594416_17594780_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17594416 - 17594780
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTAAAATT
Flanking Amino Acid:
RLVKCVSSTVGGHNIGKILI
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.43
1
65.4
39.1
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
50.3
0.09
1.9
74.24
37.2

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641