Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17594921_17595165_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17594921 - 17595165

Intron Length:

245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAAGTAT

5'SS Class:

major

3'SS Sequence:

TTTTCTGTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTTTCTGTAACA

Flanking Amino Acid:

ADKNSIHVAMADEAYCIGPA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

66.8

34.4

Major BPS

70.8

0.52

70.6

31.6

Major PPT

80.7

0.69

0.9

77.2

35.8

Minor 5ss

32.4

-2

3.4

42.7

46.8

Minor BPS

72.2

0.69

86.93

31.8

Associated Gene:

Gene:

MCCC1

Ensembl Gene ID:

ENSAPLG00000008989

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009393

17593142 - 17609782

16641