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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17595262_17595427_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17595262 - 17595427
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTATTCTATTT
Flanking Amino Acid:
IKVAKASAVEAIHPGYGFLS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.6
0.69
0.8
78.8
34
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
46.5
-0.1
1.8
67.05
38.2

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641