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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17596691_17597515_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17596691 - 17597515
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
TGGTGTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGTGGTGTATTC
Flanking Amino Acid:
IKAVRGGGGKGMRIAHSEKE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
74.1
0.6
1
69
38.9
Major PPT
68.4
0.41
1
59.3
46
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
38
-0.9
2.4
49.74
41.9

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641