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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17597638_17598554_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17597638 - 17598554
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTATGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATGAAAC
Flanking Amino Acid:
MLIEKFVDNPRHVEVQVFGD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
64.2
0.32
1.1
59.2
44.8
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
50.8
0
1.8
66.83
37.7

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641