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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17602466_17602784_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17602466 - 17602784
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
KLRYSLHQYNIVGLSTNIDF
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
86.3
0.82
0.9
84
31
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641