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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17603002_17603641_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17603002 - 17603641
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGTAACATATCT
Flanking Amino Acid:
ATDAFRDQSGDKFSPFASST
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
45.8
-0.2
2
66.65
43

Associated Gene:

Gene:
MCCC1
Ensembl Gene ID:
ENSAPLG00000008989
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009393
17593142 - 17609782
16641