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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17629939_17633401_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17629939 - 17633401
Intron Length:
3463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
FAKNPGQKGLDLEMAIAYWN
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.5
0.69
0.9
73.7
40.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
DCUN1D1
Ensembl Gene ID:
ENSAPLG00000009496
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009917
17627403 - 17635403
8001