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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17633823_17635323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17633823 - 17635323
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATGTTCTGAGCC
Flanking Amino Acid:
ADDMSNYDEEGAWPVLIDDF
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
78.6
35.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.4
0.82
0.6
85.3
22
Minor 5ss
41.6
-0.9
3.6
64.1
47.4
Minor BPS
54.1
0.11
1.7
65.39
40.1

Associated Gene:

Gene:
DCUN1D1
Ensembl Gene ID:
ENSAPLG00000009496
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009917
17627403 - 17635403
8001