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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17645028_17648674_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17645028 - 17648674
Intron Length:
3647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
MGRCSPTRVNRSWSSSDPFY
Intron Amino Acid Position:
1284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
76.5
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.5
0.55
0.9
71.9
38.6
Minor 5ss
34.6
-1.8
3.2
47.3
48.3
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000036375
17644946 - 17701759
56814