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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17648355_17648674_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17648355 - 17648674
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTCTTGATT
Flanking Amino Acid:
MGRCSPTRVNR*
Intron Amino Acid Position:
1284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
76.5
33.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.5
0.71
0.6
81.3
23.8
Minor 5ss
34.6
-1.8
3.2
47.3
48.3
Minor BPS
75.4
0.88
1.1
88.08
30.2

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045892
17647934 - 17701759
53826