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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17648809_17655042_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17648809 - 17655042
Intron Length:
6234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAGTAG
5'SS Class:
major
3'SS Sequence:
TTCATCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SRARNQLSKISLLRQVQVST
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.9
41.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
73.4
37
Minor 5ss
34
-1.8
3.6
45.4
49.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039878
17648675 - 17701759
53085