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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17648809_17658938_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17648809 - 17658938
Intron Length:
10130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LQPTSTEKAQLTETSSGINC
Intron Amino Acid Position:
1240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
73.4
37
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000036375
17644946 - 17701759
56814
ENSAPLT00000010171
17644946 - 17701759
56814