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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17651497_17655042_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17651497 - 17655042
Intron Length:
3546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAGTAG
5'SS Class:
major
3'SS Sequence:
TCTGTCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAA
U12 Branch Point Sequence:
TGCTTTATAAGA
Flanking Amino Acid:
SRARNQLSKIRWKKIRVQSA
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.9
41.6
Major BPS
70.1
0.5
1
67.3
39.3
Major PPT
78.2
0.63
0.8
70
36.6
Minor 5ss
34
-1.8
3.6
45.4
49.7
Minor BPS
48.1
-0.1
1.9
59.92
40.4

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043680
17651374 - 17701759
50386