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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17655129_17658938_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17655129 - 17658938
Intron Length:
3810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
CTCTGTCCAATT
Flanking Amino Acid:
LQPTSTEKAQMYSNRVALSD
Intron Amino Acid Position:
1240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
70.2
0.45
0.9
63.6
37
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
42.5
-0.4
2.1
59.92
44.5

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039878
17648675 - 17701759
53085
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000043680
17651374 - 17701759
50386