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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17659838_17663274_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17659838 - 17663274
Intron Length:
3437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATTGAAGC
Flanking Amino Acid:
EDTSLLGNGQMALETHFWTW
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83
0.74
0.9
80.7
36.3
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
50.1
-0
1.9
66.61
38.8

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036375
17644946 - 17701759
56814