About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17660196_17663274_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17660196 - 17663274
Intron Length:
3079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
GCCACTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATTTATTT
Flanking Amino Acid:
EDTSLLGNGQMFGNWTFGTL
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
67.3
0.39
0.9
64.7
36.3
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
47.9
-0
1.7
63.63
41.2

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000043680
17651374 - 17701759
50386
ENSAPLT00000039878
17648675 - 17701759
53085