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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17671123_17672066_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17671123 - 17672066
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
AAACAAAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTCCTATCT
Flanking Amino Acid:
MEVKSLGKPERYKLLHVLEF
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
44.3
-0.3
1.1
31.9
32.9
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
57.9
0.33
2
80
42.1

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000043680
17651374 - 17701759
50386
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000039878
17648675 - 17701759
53085
ENSAPLT00000036375
17644946 - 17701759
56814