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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17672691_17672989_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17672691 - 17672989
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTACAAATAATC
Flanking Amino Acid:
DSPDGNMHSLMKEEELFLKA
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.3
0.86
0.7
83.2
25.4
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
45.6
-0.3
1.9
60.63
37.6

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000043680
17651374 - 17701759
50386
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000039878
17648675 - 17701759
53085
ENSAPLT00000036375
17644946 - 17701759
56814