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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17678331_17679133_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17678331 - 17679133
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCATTTTTAAAC
Flanking Amino Acid:
TISQQIEEIVRPLGPESLLL
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
64.3
0.43
1.3
67.66
38

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036375
17644946 - 17701759
56814
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000043680
17651374 - 17701759
50386
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000039878
17648675 - 17701759
53085