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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17679909_17680022_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17679909 - 17680022
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGAGTT
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTGTATAATA
Flanking Amino Acid:
ASLDGETNLKTHVAVPETAV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
71.6
38.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
37.9
-1.4
3.4
56.2
48
Minor BPS
50.6
0.01
2
67.44
39.9

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000039878
17648675 - 17701759
53085
ENSAPLT00000036375
17644946 - 17701759
56814
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000045892
17647934 - 17701759
53826
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000043680
17651374 - 17701759
50386