About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17680428_17684913_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17680428 - 17684913
Intron Length:
4486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
GTGTTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTGTTTTCCACA
Flanking Amino Acid:
FVITVTAIKQGYEDWLRHKA
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.9
0.63
0.9
72.5
37.8
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
47
-0.2
1.9
59.35
41

Associated Gene:

Gene:
ATP11B
Ensembl Gene ID:
ENSAPLG00000009719
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032601
17651374 - 17701759
50386
ENSAPLT00000043680
17651374 - 17701759
50386
ENSAPLT00000010171
17644946 - 17701759
56814
ENSAPLT00000039878
17648675 - 17701759
53085
ENSAPLT00000036375
17644946 - 17701759
56814
ENSAPLT00000035075
17654039 - 17701759
47721
ENSAPLT00000045892
17647934 - 17701759
53826