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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17755647_17795556_R

Intron Information:

Intron Rank:
133392
Intron Class:
major
Intron Phase:
Intron Coordinates:
17755647 - 17795556
Intron Length:
39910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTCTAATCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
47.3
-0.1
2
66.25
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019012
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038295
17755366 - 17795909
40544