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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17783949_17784040_R

Intron Information:

Intron Rank:
142635
Intron Class:
major
Intron Phase:
Intron Coordinates:
17783949 - 17784040
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGTTGCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
73.8
0.54
0.8
66.2
35.8
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
50.3
-0.1
2.2
63.65
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024006
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017705
17783113 - 17784560
1448