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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1779475_1787262_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1779475 - 1787262
Intron Length:
7788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
AFNPEPLVLQSFPSDEGWPF
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
82.1
34.6
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
DIPK2A
Ensembl Gene ID:
ENSAPLG00000000595
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000570
1776412 - 1788013
11602