Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17795697_17811214_R

Intron Information:

Intron Rank:

133389

Intron Class:

major

Intron Phase:

Intron Coordinates:

17795697 - 17811214

Intron Length:

15518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGGTTT

5'SS Class:

major

3'SS Sequence:

TCTACCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTTTCTCTACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

70.4

42.5

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.1

0.61

0.8

70.1

30.7

Minor 5ss

40.8

-1

3.7

55.1

49.1

Minor BPS

61.1

0.33

1.9

78.9

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026050

17795680 - 17835692

40013