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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17887444_17959903_R

Intron Information:

Intron Rank:
136288
Intron Class:
major
Intron Phase:
Intron Coordinates:
17887444 - 17959903
Intron Length:
72460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGAATCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTTTTGTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
69
0.43
1
59.5
45.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
56
0.17
2.1
74.51
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020741
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047994
17887058 - 18058699
171642