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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17898393_17899538_F

Intron Information:

Intron Rank:
125778
Intron Class:
major
Intron Phase:
Intron Coordinates:
17898393 - 17899538
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAACGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGAATCTGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
100
1.24
0.5
100
0
Major PPT
65.9
0.36
1.1
57.9
42.1
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
55.1
0.02
1.6
58.88
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017743
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044457
17897271 - 17914028
16758