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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17936108_17959903_R

Intron Information:

Intron Rank:
136285
Intron Class:
major
Intron Phase:
Intron Coordinates:
17936108 - 17959903
Intron Length:
23796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTCTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.6
0.64
0.8
77.9
29.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
61
0.43
1.7
79.24
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020741
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029478
17935207 - 18058699
123493