Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18068498_18069208_F

Intron Information:

Intron Rank:

130380

Intron Class:

major

Intron Phase:

Intron Coordinates:

18068498 - 18069208

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TATTTGCTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

35.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.5

0.66

0.8

74.1

36.3

Minor 5ss

32.5

-2

3.1

33.3

41.7

Minor BPS

59.9

0.31

1.8

75.92

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023024

18064678 - 18069259

4582