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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18168162_18170043_F

Intron Information:

Intron Rank:
130397
Intron Class:
major
Intron Phase:
Intron Coordinates:
18168162 - 18170043
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
TCTCTCAAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTCTCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
67
0.38
1
60.4
39.4
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
60.7
0.31
1.6
73.49
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020152
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026144
18167541 - 18170451
2911