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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18211724_18227847_R

Intron Information:

Intron Rank:
149128
Intron Class:
major
Intron Phase:
Intron Coordinates:
18211724 - 18227847
Intron Length:
16124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTTTTTGCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.2
0.63
0.9
73.2
36.4
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
49.9
-0
1.9
67
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027733
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029471
18211643 - 18337503
125861