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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18363764_18364103_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18363764 - 18364103
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTATTCTAAACT
Flanking Amino Acid:
KQALQNLPKPDFRGYYRGGF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
67.2
0.62
1.7
81.23
40.2

Associated Gene:

Gene:
DNAJC19
Ensembl Gene ID:
ENSAPLG00000009956
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010366
18363395 - 18366101
2707