Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18370012_18370405_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18370012 - 18370405

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTATTCTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTACTGAATT

Flanking Amino Acid:

ETLAKTKKEAAKDAIDENCP

Intron Amino Acid Position:

595

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

66.4

39.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.3

0.66

83.7

31.6

Minor 5ss

30.3

-2.3

3.3

39.1

46.1

Minor BPS

72.2

0.78

1.6

90.26

33.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010032

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041443

18369572 - 18398115

28544

ENSAPLT00000010528

18369841 - 18398115

28275