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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18370498_18372911_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18370498 - 18372911
Intron Length:
2414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCTTGTACA
Flanking Amino Acid:
FRGQAEDRQPVTVADYISRA
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
70.8
41.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.9
0.76
0.8
79.7
32.4
Minor 5ss
33.7
-1.9
2.8
42.2
44.2
Minor BPS
57
0.21
1.8
73.78
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010032
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041443
18369572 - 18398115
28544