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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18370498_18373737_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18370498 - 18373737
Intron Length:
3240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCTTGTACA
Flanking Amino Acid:
DTASVNENGLVTVADYISRA
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.9
0.76
0.8
79.7
32.4
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
57
0.21
1.8
73.78
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010032
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010528
18369841 - 18398115
28275