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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18376743_18376823_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18376743 - 18376823
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGGCT
5'SS Class:
major
3'SS Sequence:
ACCCTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GGTTACACGACT
Flanking Amino Acid:
LQIDEQLRQIVQGSRSYSGR
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
64.9
39
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
72.2
0.5
0.8
69.1
30.7
Minor 5ss
38.1
-1.3
3.6
52.9
46.3
Minor BPS
46.3
-0.2
2
67.84
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010032
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041443
18369572 - 18398115
28544