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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18381731_18382745_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18381731 - 18382745
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
ATTTCTCTAAAA
Flanking Amino Acid:
HAETAQLIILSASEATVKRV
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
89
0.88
0.7
84.2
30.7
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
62.6
0.39
1.7
76.02
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010032
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041443
18369572 - 18398115
28544
ENSAPLT00000010528
18369841 - 18398115
28275