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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18455646_18456698_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18455646 - 18456698
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
AAAATTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAACCTTTAAAT
Flanking Amino Acid:
ALREKKNSQENTINKTTKKL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
62
0.27
1
60.3
44.7
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
66.8
0.61
1.4
77.33
38.2

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052