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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18456858_18457791_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18456858 - 18457791
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATCA
Flanking Amino Acid:
YAKKDEGKIGALTLQVEKLT
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.9
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.8
78.2
34.5
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
58
0.25
1.9
74.45
36.9

Associated Gene:

Gene:
CCDC39
Ensembl Gene ID:
ENSAPLG00000010760
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011221
18453443 - 18472494
19052